Publications
Peer-reviewed research in epigenetics, microbiome, and immunology
23 publications
2025
1 publication
2024
2 publications
The rectal microbiome: understanding its role in HIV transmission
Català-Moll, Francesc and Paredes, Roger
10.1097/coh.0000000000000906
Deep-amplicon sequencing of the complete beta-tubulin gene in Trichuris trichiura before and after albendazole treatment
Gandasegui, Javier, Grau-Pujol, Berta, Novela, Valdemiro, Muchisse, Osvaldo, Cambra-Pellejà, Maria, Cossa, Anélsio, Jamine, José Carlos, Sacoor, Charfudin, Brienen, Eric A.T., Catala-Moll, Francesc, van Lieshout, Lisette, Martínez-Valladares, María, Paredes, Roger, Muñoz, José, and Doyle, Stephen R.
10.1016/j.ijpddr.2024.100570
2023
1 publication
2022
7 publications
Epigenetic landscape in the kick-and-kill therapeutic vaccine BCN02 clinical trial is associated with antiretroviral treatment interruption (ATI) outcome
B. Oriol-Tordera, A. Esteve-Codina, M. Berdasco, M. Rosás-Umbert, E. Gonçalves, C. Duran-Castells, F. Català-Moll, A. Llano, S. Cedeño, M.C. Puertas, M. Tolstrup, O.S. Søgaard, B. Clotet, J. Martínez-Picado, T. Hanke, B. Combadiere, R. Paredes, D. Hartigan-O'Connor, M. Esteller, M. Meulbroek, M.L. Calle, A. Sanchez-Pla, J. Moltó, B. Mothe, C. Brander, and M. Ruiz-Riol
10.1016/j.ebiom.2022.103956
Gut microbiome signatures linked to HIV-1 reservoir size and viremia control
A. Borgognone, M. Noguera-Julian, B. Oriol, L. Noël-Romas, M. Ruiz-Riol, Y. Guillén, M. Parera, M. Casadellà, C. Duran, M.C. Puertas, F. Català-Moll, M. De Leon, S. Knodel, K. Birse, C. Manzardo, J.M. Miró, B. Clotet, J. Martinez-Picado, J. Moltó, B. Mothe, A. Burgener, C. Brander, R. Paredes, S. Benet, S. Cedeño, P. Coll, A. Llano, M. Marszalek, S. Morón-López, R. Paredes, M. Rosás-Umbert, R. Escrig, S. Gel, M. López, C. Miranda, J. Muñoz, N. Perez-Alvarez, J. Puig, B. Revollo, J. Toro, A.M. Barriocanal, C. Perez-Reche, M. Farré, M. Valle, J. Ambrosioni, I. Ruiz, C. Rovira, C. Hurtado, C. Ligero, E. Fernández, S. Sánchez-Palomino, J.M. Miró, A. Carrillo, M. Meulbroek, F. Pujol, J. Saz, N. Borthwick, A. Crook, E.G. Wee, and T. Hanke
10.1186/s40168-022-01247-6
Monitoring SARS-CoV-2 variant transitions using differences in diagnostic cycle threshold values of target genes
A.E. Bordoy, V. Saludes, D. Panisello Yagüe, G. Clarà, L. Soler, A. Paris de León, C. Casañ, A. Blanco-Suárez, M. Guerrero-Murillo, B. Rodríguez-Ponga, M. Noguera-Julian, F. Català-Moll, I. Pey, M.P. Armengol, M. Casadellà, M. Parera, R. Pluvinet, L. Sumoy, B. Clotet, M. Giménez, E. Martró, P.-J. Cardona, and I. Blanco
10.1038/s41598-022-25719-9
Probiotic effects on immunity and microbiome in HIV-1 discordant patients
C. Blázquez-Bondia, M. Parera, F. Català-Moll, M. Casadellà, A. Elizalde-Torrent, M. Aguiló, J. Espadaler-Mazo, J.R. Santos, R. Paredes, and M. Noguera-Julian
10.3389/fimmu.2022.1066036
Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses
J. Rodríguez-Ubreva, A. Arutyunyan, M.J. Bonder, L. Del Pino-Molina, S.J. Clark, C. de la Calle-Fabregat, L. Garcia-Alonso, L.-F. Handfield, L. Ciudad, E. Andrés-León, F. Krueger, F. Català-Moll, V.C. Rodríguez-Cortez, K. Polanski, L. Mamanova, S. van Dongen, V.Y. Kiselev, M.T. Martínez-Saavedra, H. Heyn, J. Martín, K. Warnatz, E. López-Granados, C. Rodríguez-Gallego, O. Stegle, G. Kelsey, R. Vento-Tormo, and E. Ballestar
10.1038/s41467-022-29450-x
Vaccination with an HIV T-cell immunogen induces alterations in the mouse gut microbiota
A. Borgognone, A. Elizalde-Torrent, M. Casadellà, L. Romero, T. Escribà, M. Parera, F. Català-Moll, M. Noguera-Julian, C. Brander, A. Olvera, and R. Paredes
10.1038/s41522-022-00368-y
Vitamin D receptor, STAT3, and TET2 cooperate to establish tolerogenesis
F. Català-Moll, A.G. Ferreté-Bonastre, G. Godoy-Tena, O. Morante-Palacios, L. Ciudad, L. Barberà, F. Fondelli, E.M. Martínez-Cáceres, J. Rodríguez-Ubreva, T. Li, and E. Ballestar
10.1016/j.celrep.2021.110244
2021
7 publications
Activation-induced deaminase is critical for the establishment of DNA methylation patterns prior to the germinal center reaction
F. Català-Moll, A.G. Ferreté-Bonastre, T. Li, D. Weichenhan, P. Lutsik, L. Ciudad, Á.F. Álvarez-Prado, J. Rodríguez-Ubreva, C. Klemann, C. Speckmann, A. Vilas-Zornoza, H. Abolhassani, M. Martínez-Gallo, R. Dieli-Crimi, J.G. Rivière, A. Martín-Nalda, R. Colobran, P. Soler-Palacín, S. Kracker, L. Hammarström, F. Prosper, A. Durandy, B. Grimbacher, C. Plass, and E. Ballestar
10.1093/nar/gkab322
Genomic and phenotypic insights from an atlas of genetic effects on DNA methylation
J.L. Min, G. Hemani, E. Hannon, K.F. Dekkers, J. Castillo-Fernandez, R. Luijk, E. Carnero-Montoro, D.J. Lawson, K. Burrows, M. Suderman, A.D. Bretherick, T.G. Richardson, J. Klughammer, V. Iotchkova, G. Sharp, A. Al Khleifat, A. Shatunov, A. Iacoangeli, W.L. McArdle, K.M. Ho, A. Kumar, C. Söderhäll, C. Soriano-Tárraga, E. Giralt-Steinhauer, N. Kazmi, D. Mason, A.F. McRae, D.L. Corcoran, K. Sugden, S. Kasela, A. Cardona, F.R. Day, G. Cugliari, C. Viberti, S. Guarrera, M. Lerro, R. Gupta, S. Bollepalli, P. Mandaviya, Y. Zeng, T.-K. Clarke, R.M. Walker, V. Schmoll, D. Czamara, C. Ruiz-Arenas, F.I. Rezwan, R.E. Marioni, T. Lin, Y. Awaloff, M. Germain, D. Aïssi, R. Zwamborn, K. van Eijk, A. Dekker, J. van Dongen, J.-J. Hottenga, G. Willemsen, C.-J. Xu, G. Barturen, F. Català-Moll, M. Kerick, C. Wang, P. Melton, H.R. Elliott, J. Shin, M. Bernard, I. Yet, M. Smart, T. Gorrie-Stone, C. Shaw, A. Al Chalabi, S.M. Ring, G. Pershagen, E. Melén, J. Jiménez-Conde, J. Roquer, D.A. Lawlor, J. Wright, N.G. Martin, G.W. Montgomery, T.E. Moffitt, R. Poulton, T. Esko, L. Milani, A. Metspalu, J.R.B. Perry, K.K. Ong, N.J. Wareham, G. Matullo, C. Sacerdote, S. Panico, A. Caspi, L. Arseneault, F. Gagnon, M. Ollikainen, J. Kaprio, J.F. Felix, F. Rivadeneira, H. Tiemeier, M.H. van IJzendoorn, A.G. Uitterlinden, V.W.V. Jaddoe, C. Haley, A.M. McIntosh, K.L. Evans, A. Murray, K. Räikkönen, J. Lahti, E.A. Nohr, T.I.A. Sørensen, T. Hansen, C.S. Morgen, E.B. Binder, S. Lucae, J.R. Gonzalez, M. Bustamante, J. Sunyer, J.W. Holloway, W. Karmaus, H. Zhang, I.J. Deary, N.R. Wray, J.M. Starr, M. Beekman, D. van Heemst, P.E. Slagboom, P.-E. Morange, D.-A. Trégouët, J.H. Veldink, G.E. Davies, E.J.C. de Geus, D.I. Boomsma, J.M. Vonk, B. Brunekreef, G.H. Koppelman, M.E. Alarcón-Riquelme, R.-C. Huang, C.E. Pennell, J. van Meurs, M.A. Ikram, A.D. Hughes, T. Tillin, N. Chaturvedi, Z. Pausova, T. Paus, T.D. Spector, M. Kumari, L.C. Schalkwyk, P.M. Visscher, G. Davey Smith, C. Bock, T.R. Gaunt, J.T. Bell, B.T. Heijmans, J. Mill, and C.L. Relton
10.1038/s41588-021-00923-x
Integrative Analysis Reveals a Molecular Stratification of Systemic Autoimmune Diseases
G. Barturen, S. Babaei, F. Català-Moll, M. Martínez-Bueno, Z. Makowska, J. Martorell-Marugán, P. Carmona-Sáez, D. Toro-Domínguez, E. Carnero-Montoro, M. Teruel, M. Kerick, M. Acosta-Herrera, L. Le Lann, C. Jamin, J. Rodríguez-Ubreva, A. García-Gómez, J. Kageyama, A. Buttgereit, S. Hayat, J. Mueller, R. Lesche, M. Hernandez-Fuentes, M. Juarez, T. Rowley, I. White, C. Marañón, T. Gomes Anjos, N. Varela, R. Aguilar-Quesada, F.J. Garrancho, A. López-Berrio, M. Rodriguez Maresca, H. Navarro-Linares, I. Almeida, N. Azevedo, M. Brandão, A. Campar, R. Faria, F. Farinha, A. Marinho, E. Neves, A. Tavares, C. Vasconcelos, E. Trombetta, G. Montanelli, B. Vigone, D. Alvarez-Errico, T. Li, D. Thiagaran, R. Blanco Alonso, A. Corrales Martínez, F. Genre, R. López Mejías, M.A. Gonzalez-Gay, S. Remuzgo, B. Ubilla Garcia, R. Cervera, G. Espinosa, I. Rodríguez-Pintó, E. De Langhe, J. Cremer, R. Lories, D. Belz, N. Hunzelmann, N. Baerlecken, K. Kniesch, T. Witte, M. Lehner, G. Stummvoll, M. Zauner, M.A. Aguirre-Zamorano, N. Barbarroja, M.C. Castro-Villegas, E. Collantes-Estevez, E. de Ramon, I. Díaz Quintero, A. Escudero-Contreras, M.C. Fernández Roldán, Y. Jiménez Gómez, I. Jiménez Moleón, R. Lopez-Pedrera, R. Ortega-Castro, N. Ortego, E. Raya, C. Artusi, M. Gerosa, P.L. Meroni, T. Schioppo, A. De Groof, J. Ducreux, B. Lauwerys, A.-L. Maudoux, D. Cornec, V. Devauchelle-Pensec, S. Jousse-Joulin, P.-E. Jouve, B. Rouvière, A. Saraux, Q. Simon, M. Alvarez, C. Chizzolini, A. Dufour, D. Wynar, A. Balog, M. Bocskai, M. Deák, S. Dulic, G. Kádár, L. Kovács, Q. Cheng, V. Gerl, F. Hiepe, L. Khodadadi, S. Thiel, E. de Rinaldis, S. Rao, R.J. Benschop, C. Chamberlain, E.R. Dow, Y. Ioannou, L. Laigle, J. Marovac, J. Wojcik, Y. Renaudineau, M.O. Borghi, J. Frostegård, J. Martín, L. Beretta, E. Ballestar, F. McDonald, J.-O. Pers, and M.E. Alarcón-Riquelme
10.1002/art.41610
Integrative epigenomics in Sjögren´s syndrome reveals novel pathways and a strong interaction between the HLA, autoantibodies and the interferon signature
M. Teruel, G. Barturen, M. Martínez-Bueno, O. Castellini-Pérez, M. Barroso-Gil, E. Povedano, M. Kerick, F. Català-Moll, Z. Makowska, A. Buttgereit, L. Beretta, B. Vigone, J.-O. Pers, A. Saraux, V. Devauchelle-Pensec, D. Cornec, S. Jousse-Joulin, B. Lauwerys, J. Ducreux, A.-L. Maudoux, C. Vasconcelos, A. Tavares, E. Neves, R. Faria, M. Brandão, A. Campar, A. Marinho, F. Farinha, I. Almeida, M.A.G.-G. Mantecón, R.B. Alonso, A.C. Martínez, R. Cervera, I. Rodríguez-Pintó, G. Espinosa, R. Lories, E. De Langhe, N. Hunzelmann, D. Belz, T. Witte, N. Baerlecken, G. Stummvoll, M. Zauner, M. Lehner, E. Collantes, R. Ortega-Castro, M.ªA. Aguirre-Zamorano, A. Escudero-Contreras, M.ªC. Castro-Villegas, N. Ortego, M.C.F. Roldán, E. Raya, I.J. Moleón, E. de Ramon, I.D. Quintero, P.L. Meroni, M. Gerosa, T. Schioppo, C. Artusi, C. Chizzolini, A. Zuber, D. Wynar, L. Kovács, A. Balog, M. Deák, M. Bocskai, S. Dulic, G. Kádár, F. Hiepe, V. Gerl, S. Thiel, M.R. Maresca, A. López-Berrio, R. Aguilar-Quesada, H. Navarro-Linares, M. Alvarez, D. Alvarez‑Errico, N. Azevedo, N. Barbarroja, A. Buttgereit, Q. Cheng, C. Chizzolini, J. Cremer, A. De Groof, E. De Langhe, J. Ducreux, A. Dufour, V. Gerl, M. Hernandez‑Fuentes, L. Khodadadi, K. Kniesch, T. Li, C. Lopez‑Pedrera, Z. Makowska, C. Marañón, B. Muchmore, E. Neves, B. Rouvière, Q. Simon, E. Trombetta, N. Varela, T. Witte, J.-O. Pers, C. Marañón, E. Ballestar, J. Martin, E. Carnero-Montoro, and M.E. Alarcón-Riquelme
10.1038/s41598-021-01324-0
JAK2-STAT Epigenetically Regulates Tolerized Genes in Monocytes in the First Encounter With Gram-Negative Bacterial Endotoxins in Sepsis
O. Morante-Palacios, C. Lorente-Sorolla, L. Ciudad, J. Calafell-Segura, A. Garcia-Gomez, F. Català-Moll, A. Ruiz-Sanmartín, M. Martínez-Gallo, R. Ferrer, J.C. Ruiz-Rodriguez, D. Álvarez-Errico, and E. Ballestar
10.3389/fimmu.2021.734652
Performance of 16s metagenomic profiling in formalin-fixed paraffin-embedded versus fresh-frozen colorectal cancer tissues
A. Borgognone, G. Serna, M. Noguera-Julian, L. Alonso, M. Parera, F. Català-Moll, L. Sanchez, R. Fasani, R. Paredes, and P. Nuciforo
10.3390/cancers13215421
Targeting aberrant DNA methylation in mesenchymal stromal cells as a treatment for myeloma bone disease
A. Garcia-Gomez, T. Li, C. de la Calle-Fabregat, J. Rodríguez-Ubreva, L. Ciudad, F. Català-Moll, G. Godoy-Tena, M. Martín-Sánchez, L. San-Segundo, S. Muntión, X. Morales, C. Ortiz-de-Solórzano, J. Oyarzabal, E. San José-Enériz, M. Esteller, X. Agirre, F. Prosper, M. Garayoa, and E. Ballestar
10.1038/s41467-020-20715-x
2019
2 publications
Inflammatory cytokines and organ dysfunction associate with the aberrant DNA methylome of monocytes in sepsis
C. Lorente-Sorolla, A. Garcia-Gomez, F. Català-Moll, V. Toledano, L. Ciudad, J. Avendaño-Ortiz, C. Maroun-Eid, A. Martín-Quirós, M. Martínez-Gallo, A. Ruiz-Sanmartín, Á.G. Del Campo, R. Ferrer-Roca, J.C. Ruiz-Rodriguez, D. Álvarez-Errico, E. López-Collazo, and E. Ballestar
10.1186/s13073-019-0674-2
Inflammatory cytokines shape a changing DNA methylome in monocytes mirroring disease activity in rheumatoid arthritis
J. Rodríguez-Ubreva, C. De La Calle-Fabregat, T. Li, L. Ciudad, M.L. Ballestar, F. Català-Moll, O. Morante-Palacios, A. Garcia-Gomez, R. Celis, F. Humby, A. Nerviani, J. Martin, C. Pitzalis, J.D. Cañete, and E. Ballestar
10.1136/annrheumdis-2019-215355
2017
3 publications
Activation-induced cytidine deaminase targets SUV4-20-mediated histone H4K20 trimethylation to class-switch recombination sites
V.C. Rodríguez-Cortez, P. Martínez-Redondo, F. Català-Moll, J. Rodríguez-Ubreva, A. Garcia-Gomez, G. Poorani-Subramani, L. Ciudad, H. Hernando, A. Pérez-García, C. Company, J.M. Urquiza, A.R. Ramiro, J.M. Di Noia, A. Vaquero, and E. Ballestar
10.1038/s41598-017-07380-9
Prostaglandin E2 Leads to the Acquisition of DNMT3A-Dependent Tolerogenic Functions in Human Myeloid-Derived Suppressor Cells
J. Rodríguez-Ubreva, F. Català-Moll, N. Obermajer, D. Álvarez-Errico, R.N. Ramirez, C. Company, R. Vento-Tormo, G. Moreno-Bueno, R.P. Edwards, A. Mortazavi, P. Kalinski, and E. Ballestar
10.1016/j.celrep.2017.09.018
TET2- and TDG-mediated changes are required for the acquisition of distinct histone modifications in divergent terminal differentiation of myeloid cells
A. Garcia-Gomez, T. Li, M. Kerick, F. Català-Moll, N.R. Comet, J. Rodríguez-Ubreva, L. De La Rica, M.R. Branco, J. Martín, and E. Ballestar
10.1093/nar/gkx666